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50 events occurring around 0d3258eea89bfc03.
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2019-09-12
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| 20:22 | synchronise model fit code with snptest. Update to use metro::CholeskyStepper. check-in: d0f76d3483 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 13:27 | GenomeSequence.cpp: only interpret FASTA header as range if it can be parsed that way check-in: faab7d6e7d user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 12:42 | Bump to v2.0.6. Pull info fix from default branch and test it check-in: 2e1af6263a user: gavin.band@well.ox.ac.uk tags: release, v2.0.6 | |
| 12:20 | removed info.R, which was out of date check-in: 40f3b73694 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 12:19 | Add info_test.R to tests.txt check-in: ced3b4c483 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 12:17 | Moved test_info -> info_test check-in: c07d9a9b48 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
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2019-08-27
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| 15:50 | selfmap: make sequences named check-in: bd1601c963 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 12:25 | selfmap: let -sequence take multiple values check-in: c798b9a9c7 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 12:25 | selfmap: update for fasta files with multiple sequences. Build by default check-in: 35990cb05c user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 08:36 | selfmap: work toward proper support for FASTA files check-in: 153e58030e user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 08:36 | SNPSummaryComputation: fix info computation for missing data samples check-in: 19b60e8071 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 08:05 | qctool: pull -incl-samples changes from beta branch check-in: 02165adf99 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 08:05 | appcontext.hpp: include get_current_time_as_string.hpp check-in: 2f20ec873b user: gavin.band@well.ox.ac.uk tags: master, trunk | |
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2019-08-22
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| 08:57 | Pull ImputeHaplotypesSNPDataSource.cpp change from 6d09d1105b5e check-in: abb309ec85 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 08:53 | wscript: don't import UnitTest check-in: e6213dedf1 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 08:53 | qctool: header include simplification check-in: d2e07d63f4 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
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2019-05-30
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| 16:45 | Inthinnerator: fix bug by copying data correctly in TaggedSnp check-in: 5a8b88c8d9 user: gavin.band@well.ox.ac.uk tags: trunk | |
| 16:13 | Update for --all_targets check-in: bdff1e82d8 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 15:58 | pull inthinnerator changes from default branch check-in: e754dfd950 user: gavin.band@well.ox.ac.uk tags: trunk | |
| 15:44 | inthinnerator: pull column names changes from beta branch check-in: be1cadb38c user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 15:35 | Merged inthinnerator changes, beta branch check-in: c9826d7799 user: gavin.band@well.ox.ac.uk tags: trunk | |
| 15:30 | Merged check-in: 1bab1d95a0 user: gavin.band@well.ox.ac.uk tags: trunk | |
| 15:23 | inthinnerator: output all input file columns check-in: f590d4316f user: gavin.band@well.ox.ac.uk tags: trunk | |
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2019-05-29
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| 21:37 | Merged check-in: b771ac2f89 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 21:32 | Added metro/summation.hpp check-in: f8aaced59e user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 21:26 | Pull inthinnerator changes from default branc, bump to 2.0.5 check-in: 0d3258eea8 user: gavin.band@well.ox.ac.uk tags: trunk | |
| 21:19 | Pull qctool change from master branch check-in: c159f99246 user: gavin.band@well.ox.ac.uk tags: trunk | |
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2019-05-09
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| 14:44 | Pull fix for #67 from beta branch check-in: fb593f108b user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 14:41 | Pull tests runner code from beta branch check-in: e56d64d028 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 14:41 | Pull tests from beta branch check-in: aafcb3481b user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 14:30 | genfile/src/SNPDataSourceRack.cpp: get supported specs in same order they occur in 1st file supplied, working round vcf GT ordering bug. Test for #67 check-in: cb146ca1ad user: gavin.band@well.ox.ac.uk tags: trunk | |
| 13:55 | Pull fix for #67 from default branch. Update test to test for fix for #62 check-in: 948606951b user: gavin.band@well.ox.ac.uk tags: trunk | |
| 12:46 | metro: use neumaier_sum in MultinomialRegressionLogLikelihood, BinomialLogistic and Logistic check-in: 7695f58b71 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 12:45 | Fix issue #67, preserve fix for #62 check-in: ced14878b8 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
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2019-05-04
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| 21:00 | multifinemap: write "posterior" in output columns, not "logposterior" check-in: 0dd62dd9fe user: gavin.band@well.ox.ac.uk tags: master, trunk | |
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2019-04-15
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| 11:53 | docs: update link to bgen format check-in: 58be19af75 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
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2019-03-29
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| 08:38 | Pull finalise() fix to OffsetFlippedAlleleSetter from beta branch check-in: 12c3304931 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
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2019-03-27
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| 16:22 | test: bump qctool to v2.0.3 to make tests run again check-in: dabe3eab27 user: gavin.band@well.ox.ac.uk tags: trunk | |
| 16:05 | bump to v2.0.2, call finalise() in OffsetFlippedAlleleSetter to fix issue #62 check-in: 182f79f852 user: gavin.band@well.ox.ac.uk tags: trunk | |
| 15:09 | added test_info.R check-in: 8c368a9a4d user: gavin.band@well.ox.ac.uk tags: master, trunk | |
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2019-01-26
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| 21:48 | Set null priors focus on zero again. Fit model starting at null parameters. check-in: ac5d8df89a user: gavin.band@well.ox.ac.uk tags: master, trunk | |
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2019-01-22
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| 21:07 | multifinemap: implement -incl-range[s\ and -excl-range[s] check-in: e8ebd4e124 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 17:50 | Merged check-in: c4fb6a2fde user: gavin.band@well.ox.ac.uk tags: trunk | |
| 17:48 | Merge branches check-in: 27c343ae4a user: gavin.band@well.ox.ac.uk tags: trunk | |
| 17:45 | Closing branch check-in: 308f43788a user: gavin.band@well.ox.ac.uk tags: trunk | |
| 17:44 | wscript: fix inthinnerator link line check-in: b2305f3376 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 17:40 | inthinnerator: fix sqlite output check-in: 8165538de1 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 17:11 | inthinnerator: implement -o for sqlite output check-in: 43faaf3bc0 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 16:13 | inthinnerator: implement nearest_gene in output check-in: 820bdf37a4 user: gavin.band@well.ox.ac.uk tags: master, trunk | |
| 16:05 | inthinnerator: implement nearest_gene check-in: 095528ff61 user: gavin.band@well.ox.ac.uk tags: master, trunk | |