Live Tickets
Key: Active Review Fixed Tested Deferred Closed
# mtime type status subsystem title
00feb374f7 2020-06-27 16:57:11 Documentation Open   Improve documentation on -snp-stats output
08a8716322 2020-06-27 16:24:11 Code_Defect Open   Qctool fails on vcf file with mix of phased and unphased calls
0ca1159b29 2021-12-08 14:38:21 Build_Problem Fixed   Avoid fossil as a dependency of qctool build
12291883f2 2020-08-22 22:40:20 Documentation Open   .tgz is the incorrect suffix for a zip file
22d94b2f01 2020-06-27 16:52:43 Documentation Open   Report algorithm for INFO score calculation in documentation
347169decb 2021-04-15 14:41:20 Documentation Fixed   Docs: do not link to missing SHAPEIT doc format page
40450bb5f8 2020-06-27 17:05:42 Code_Defect Open   assert(0) message when no sample file is provided
4d88dff8cc 2020-06-30 17:04:40 Code_Defect Fixed   MalformedInputError with GP Data
51b74b434a 2020-06-27 17:08:50 Feature_Request Open   Spliting multi-allelics into biallelic variants for GEMMA and others applications
64b2676691 2022-07-28 10:10:02 Code_Defect Open   QCTOOL does not output dosages for bimbam
6f12e37d07 2020-06-27 17:07:32 Code_Defect Open   qctool long format number_of_alleles does not match docs.
9c01ec9ee1 2020-06-27 16:47:52 Code_Defect Fixed   QCTOOL compile fails on older compilers
a31af45e24 2021-11-05 00:05:47 Build_Problem Fixed   QCTOOL build fails on gcc 4.4.7
b0a29cc9c1 2022-05-06 14:56:48 Incident Open   Illegal instruction (core dumped)
b952a6be87 2020-07-09 11:58:10 Code_Defect Fixed   Put sample identifiers into BGEN output files
be64f1db2b 2020-06-27 17:04:29 Documentation Open   -flip-to-match-cohort1 / -match-alleles-to-cohort1 doc issue
c08e92e201 2020-06-27 16:22:47 Feature_Request Open   Don't depend on system zlib
c4328f50dc 2022-05-06 14:26:24 Build_Problem Fixed   Build fails
c5cc1032e8 2021-03-29 12:54:50 Code_Defect Open   Apparently random failures when using tab-separated input files
d75b254c2b 2020-08-27 09:02:45 Feature_Request Open   Compression level versus file size
e2c2e48101 2021-04-15 15:01:00 Documentation Fixed   Docs: do not link to invalid FILE FORMAT page
ed21a597d5 2022-05-06 14:50:56 Documentation Closed   Memory usage expectations for VCF to BGEN conversion?
f772e0095a 2020-06-27 17:11:55 Code_Defect Open   Support computing SNP stats from phased genotype probabilities
8e76a0d792 2023-10-03 17:58:45 Code_Defect Open   Problems generating Bgen file from
a3db1be34b 2024-04-12 14:02:26 Build_Problem Open   Build error
5972634ffe 2024-04-19 09:12:37 Build_Problem Open   Not able to compile qc tool
c8806e2921 2024-05-14 07:43:33 Build_Problem Open   Tagged version releases above 2.2.0