| 00feb374f7 |
2020-06-27 16:57:11
|
Documentation
|
Open
|
|
Improve documentation on -snp-stats output
|
| 08a8716322 |
2020-06-27 16:24:11
|
Code_Defect
|
Open
|
|
Qctool fails on vcf file with mix of phased and unphased calls
|
| 22d94b2f01 |
2020-06-27 16:52:43
|
Documentation
|
Open
|
|
Report algorithm for INFO score calculation in documentation
|
| 40450bb5f8 |
2020-06-27 17:05:42
|
Code_Defect
|
Open
|
|
assert(0) message when no sample file is provided
|
| 51b74b434a |
2020-06-27 17:08:50
|
Feature_Request
|
Open
|
|
Spliting multi-allelics into biallelic variants for GEMMA and others applications
|
| 6f12e37d07 |
2020-06-27 17:07:32
|
Code_Defect
|
Open
|
|
qctool long format number_of_alleles does not match docs.
|
| 9c01ec9ee1 |
2020-06-27 16:47:52
|
Code_Defect
|
Fixed
|
|
QCTOOL compile fails on older compilers
|
| be64f1db2b |
2020-06-27 17:04:29
|
Documentation
|
Open
|
|
-flip-to-match-cohort1 / -match-alleles-to-cohort1 doc issue
|
| c08e92e201 |
2020-06-27 16:22:47
|
Feature_Request
|
Open
|
|
Don't depend on system zlib
|
| f772e0095a |
2020-06-27 17:11:55
|
Code_Defect
|
Open
|
|
Support computing SNP stats from phased genotype probabilities
|
| 4d88dff8cc |
2020-06-30 17:04:40
|
Code_Defect
|
Fixed
|
|
MalformedInputError with GP Data
|
| b952a6be87 |
2020-07-09 11:58:10
|
Code_Defect
|
Fixed
|
|
Put sample identifiers into BGEN output files
|
| 12291883f2 |
2020-08-22 22:40:20
|
Documentation
|
Open
|
|
.tgz is the incorrect suffix for a zip file
|
| d75b254c2b |
2020-08-27 09:02:45
|
Feature_Request
|
Open
|
|
Compression level versus file size
|
| c5cc1032e8 |
2021-03-29 12:54:50
|
Code_Defect
|
Open
|
|
Apparently random failures when using tab-separated input files
|
| 347169decb |
2021-04-15 14:41:20
|
Documentation
|
Fixed
|
|
Docs: do not link to missing SHAPEIT doc format page
|
| e2c2e48101 |
2021-04-15 15:01:00
|
Documentation
|
Fixed
|
|
Docs: do not link to invalid FILE FORMAT page
|
| a31af45e24 |
2021-11-05 00:05:47
|
Build_Problem
|
Fixed
|
|
QCTOOL build fails on gcc 4.4.7
|
| 0ca1159b29 |
2021-12-08 14:38:21
|
Build_Problem
|
Fixed
|
|
Avoid fossil as a dependency of qctool build
|
| c4328f50dc |
2022-05-06 14:26:24
|
Build_Problem
|
Fixed
|
|
Build fails
|
| ed21a597d5 |
2022-05-06 14:50:56
|
Documentation
|
Closed
|
|
Memory usage expectations for VCF to BGEN conversion?
|
| b0a29cc9c1 |
2022-05-06 14:56:48
|
Incident
|
Open
|
|
Illegal instruction (core dumped)
|
| 64b2676691 |
2022-07-28 10:10:02
|
Code_Defect
|
Open
|
|
QCTOOL does not output dosages for bimbam
|
