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50 most recent check-ins
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2025-03-19
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| 12:26 | Update option help Leaf check-in: 98ddaad486 user: gav tags: gb:bingwa-multivariant | |
| 12:12 | genfile vcf: supprt v4.3 check-in: 36e146ec4e user: gav tags: gb:bingwa-multivariant | |
| 12:11 | GenomeSequence: fix off-by-one coordinate start error check-in: a7aff590e2 user: gav tags: gb:bingwa-multivariant | |
| 12:10 | hptest: use sd not se in hptest output check-in: 1952610897 user: gav tags: gb:bingwa-multivariant | |
| 12:09 | bingwa: use sd not se. hptest: output wald pvalue in -no-prior mode check-in: bfa1684cee user: gav tags: gb:bingwa-multivariant | |
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2025-03-13
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| 14:12 | bingwa: more removal of debug stmts check-in: bce380dcea user: gav tags: gb:bingwa-multivariant | |
| 14:10 | bingwa: remove print statment, move to 2.2.7-devel check-in: 22ec8d3230 user: gav tags: gb:bingwa-multivariant | |
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2025-03-08
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| 15:32 | Bingwa: don't output alt identifiers by default. check-in: d6e7f28ce9 user: gav tags: gb:bingwa-multivariant | |
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2025-03-03
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| 18:07 | update tests.txt qctool version check-in: a0f413ccb4 user: gav tags: gb:bingwa-multivariant | |
| 18:04 | bingwa: add -hptest-model option check-in: 54bc059b27 user: gav tags: gb:bingwa-multivariant | |
| 17:58 | bingwa: fixes check-in: ced98d31e3 user: gav tags: gb:bingwa-multivariant | |
| 17:14 | Added host-parasite bingwa test data check-in: ab8558ac13 user: gav tags: gb:bingwa-multivariant | |
| 16:59 | bingwa: Remove unwanted print statement check-in: 893b86a5b8 user: gav tags: gb:bingwa-multivariant | |
| 15:41 | bingwa: more fixes check-in: 5dba09a798 user: gav tags: gb:bingwa-multivariant | |
| 15:41 | Bingwa: updates to ensure variable output is working check-in: 244bd1063a user: gav tags: gb:bingwa-multivariant | |
| 15:21 | bingwa: add initial hptest support check-in: 76394eb2b9 user: gav tags: gb:bingwa-multivariant | |
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2025-03-01
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| 17:27 | Upgrade to boost 1.70.0. (TODO remove boost unit test dependence) check-in: f2a8ab4a54 user: gav tags: gb:bingwa-multivariant | |
| 16:14 | Bingwa: work toward supporting multiple variants (i.e. hptest support) check-in: 8bbdb57401 user: gav tags: gb:bingwa-multivariant | |
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2025-02-28
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| 09:02 | Create new branch named "gb:bingwa-multivariant" check-in: d3e3909166 user: gav tags: gb:bingwa-multivariant | |
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2024-08-18
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| 11:05 | Doc: fix qctool download links Leaf check-in: d8b5eeb514 user: gav tags: master, trunk | |
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2024-08-14
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| 12:40 | selfmap: remove more unwanted debug check-in: ac5365a023 user: gav tags: master, trunk | |
| 12:34 | index-kmers, selfmap: remove unwanted debug check-in: d132388799 user: gav tags: master, trunk | |
| 12:33 | index-kmers, selfmap: fix yet another issue missing rc kmers check-in: dc8b63d179 user: gav tags: master, trunk | |
| 11:24 | Added index-kmers check-in: 06b82d89bf user: gav tags: master, trunk | |
| 11:23 | Fix catch-by-value warning check-in: cd581b3883 user: gav tags: master, trunk | |
| 10:48 | Fix GenomeSequence for ~ instead of : separator check-in: 121120ebbf user: gav tags: master, trunk | |
| 10:47 | Bump to v2.2.5. wscript fixes (rt library and bingwa) for compilation check-in: 475bb9ded3 user: gav tags: master, trunk | |
| 09:26 | Added bingwa to repo check-in: 3d1750b643 user: gav tags: master, trunk | |
| 09:26 | selfmap: fix compile biug check-in: ee74722330 user: gav tags: master, trunk | |
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2024-07-01
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| 15:07 | Bump to v2.2.4. selfmap: fixes to rc kmers and lower/uppercase that were causing bugs in output. check-in: db706a9112 user: gav tags: master, trunk | |
| 15:07 | DelimitedStatSource: do_read_value(): peek twice to ensure peek behaviour check-in: c5f7e11a3c user: gav tags: master, trunk | |
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2024-05-26
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| 21:28 | Import bingwa from seperate bingwa repository. check-in: f81765423c user: gav tags: master, trunk | |
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2024-03-19
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| 18:00 | Fix VCF metadata output again check-in: b4719ee3c6 user: gav tags: master, trunk | |
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2024-03-14
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| 17:49 | inthinnerator: split -g into -tsv and -g. Bump to v2.2.3 check-in: 01055d6b3f user: gav tags: master, trunk | |
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2024-03-06
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| 14:03 | Added catch.hpp check-in: 4465014fb6 user: gav tags: master, trunk | |
| 12:57 | genfile: complete synchronisation with opensnptest revision 77a6ccd88 check-in: 4ca582cb73 user: gav tags: master, trunk | |
| 12:50 | metro::regression::Design: add additional reported methods check-in: 73432ba207 user: gav tags: master, trunk | |
| 11:56 | genfile: take VariantEntry hash changes from opensnptest 0f670b31f615281cc1632063a5eb35debd996986 check-in: 28fe03be24 user: gav tags: master, trunk | |
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2023-10-13
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| 10:36 | Bumped to v2.2.2 check-in: e5723df2c0 user: gav tags: master, trunk | |
| 10:27 | VCFFormatSNPDataSink: update GT FORMAT definition to be in samoe order as spec: ID, Number, Type, Description - as this breaks some tools check-in: 36d8577029 user: gav tags: master, trunk | |
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2023-09-25
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| 16:08 | qctool: fix documentation to not say that -incl/excl-range take comma-separated lists of ranges check-in: 9e0e19be02 user: gav tags: master, trunk | |
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2023-07-10
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| 10:52 | Update release check-in: 57a4b8ece6 user: gav tags: master, trunk | |
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2022-05-06
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| 14:50 | MacOS: Fix cblas and lapack include paths check-in: eb4ffca21f user: gav tags: master, trunk | |
| 14:15 | Bump to v2.2.1. Build fix for package_revision_autogenerated check-in: cc0be76418 user: gav tags: master, trunk | |
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2021-11-30
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| 14:12 | Fix download link for v2.2.0 check-in: d031c813f8 user: gav tags: master, trunk | |
| 14:09 | Fix download page check-in: e44458ff77 user: gav tags: master, trunk | |
| 13:26 | qctool: v2.2.0 doc update. check-in: 86639c1ad4 user: gav tags: master, release, trunk, v2.2.0 | |
| 13:17 | waf release: fix for python 3 check-in: 1aa5cbf889 user: gav tags: master, trunk | |
| 13:08 | wscript: ensure package_revision_autogenerated.hpp is generated first. fixes [c4328f50dc5254d7] check-in: 5c7b688efb user: gav tags: master, trunk | |
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2021-11-13
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| 00:12 | documentation update check-in: 1a9e898c6d user: gav tags: master, trunk | |