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50 most recent check-ins

2024-05-26
21:28
Import bingwa from seperate bingwa repository. Leaf check-in: f81765423c user: gav tags: master, trunk
2024-03-19
18:00
Fix VCF metadata output again check-in: b4719ee3c6 user: gav tags: master, trunk
2024-03-14
17:49
inthinnerator: split -g into -tsv and -g. Bump to v2.2.3 check-in: 01055d6b3f user: gav tags: master, trunk
2024-03-06
14:03
Added catch.hpp check-in: 4465014fb6 user: gav tags: master, trunk
12:57
genfile: complete synchronisation with opensnptest revision 77a6ccd88 check-in: 4ca582cb73 user: gav tags: master, trunk
12:50
metro::regression::Design: add additional reported methods check-in: 73432ba207 user: gav tags: master, trunk
11:56
genfile: take VariantEntry hash changes from opensnptest 0f670b31f615281cc1632063a5eb35debd996986 check-in: 28fe03be24 user: gav tags: master, trunk
2023-10-13
10:36
Bumped to v2.2.2 check-in: e5723df2c0 user: gav tags: master, trunk
10:27
VCFFormatSNPDataSink: update GT FORMAT definition to be in samoe order as spec: ID, Number, Type, Description - as this breaks some tools check-in: 36d8577029 user: gav tags: master, trunk
2023-09-25
16:08
qctool: fix documentation to not say that -incl/excl-range take comma-separated lists of ranges check-in: 9e0e19be02 user: gav tags: master, trunk
2023-07-10
10:52
Update release check-in: 57a4b8ece6 user: gav tags: master, trunk
2022-05-06
14:50
MacOS: Fix cblas and lapack include paths check-in: eb4ffca21f user: gav tags: master, trunk
14:15
Bump to v2.2.1. Build fix for package_revision_autogenerated check-in: cc0be76418 user: gav tags: master, trunk
2021-11-30
14:12
Fix download link for v2.2.0 check-in: d031c813f8 user: gav tags: master, trunk
14:09
Fix download page check-in: e44458ff77 user: gav tags: master, trunk
13:26
qctool: v2.2.0 doc update. check-in: 86639c1ad4 user: gav tags: master, release, trunk, v2.2.0
13:17
waf release: fix for python 3 check-in: 1aa5cbf889 user: gav tags: master, trunk
13:08
wscript: ensure package_revision_autogenerated.hpp is generated first. fixes [c4328f50dc5254d7] check-in: 5c7b688efb user: gav tags: master, trunk
2021-11-13
00:12
documentation update check-in: 1a9e898c6d user: gav tags: master, trunk
00:11
selfmap.cpp: remove warning check-in: 64fb33711b user: gav tags: master, trunk
2021-11-12
22:31
Revise package_revision_autogenerated.hpp build code, fix [0ca1159b29] check-in: 1c3816a97f user: gav tags: master, trunk
22:16
Bump to v2.2.0 check-in: a133c07fc0 user: gav tags: master, trunk
2021-10-13
09:24
Bump to 2.2.0-rc4. Remove unneeded throw() specifications which cause compilation failures on older compilers. check-in: 44fb790222 user: gav tags: master, trunk
2021-07-31
13:33
qctool: add -sqlite-dont-link-variants and -sqlite-store-alt-identifiers. Don't store alt identifiers by default. Bump version to 2.2.0-rc3 check-in: e666e186cc user: gav tags: master, trunk
13:32
genfile/src/LongFormatSNPDataSource.cpp: use commas not / to separate alleles check-in: df540e7b30 user: gav tags: master, trunk
13:19
qctool: bed file output: use tabs not spaces in .bim and .fam file, as some programs require that. check-in: 32f55c83b9 user: gav tags: master, trunk
2021-05-16
21:11
Added libdeflate and zlib to the repo check-in: f1a4be1c8e user: gav tags: master, trunk
21:07
qctool: add -sqlite-dont-link-variants; bump to 2.2.0-rc2 check-in: f96603cda3 user: gav tags: master, trunk
2021-04-15
15:00
QCTOOL docs: fix issue [e2c2e48101]. check-in: 21b15f5785 user: gav tags: master, trunk
14:40
Qctool docs: fix issue [347169decb] check-in: 0056f6d35f user: gav tags: master, trunk
08:42
Qctool docs: minor tweaks check-in: 8b27a7d5ec user: gav tags: master, trunk
08:39
qctool docs: update options.json to specify -threads only applies to PCs computation check-in: 4d3c3364b4 user: gav tags: master, trunk
08:35
Update options to fix -annotate-sequence description check-in: ec3465e9c7 user: gav tags: master, trunk
2021-04-13
21:42
qctoo: nav.css: fix button width on chrome check-in: 121c5d1e81 user: gav tags: master, trunk
2021-04-07
15:15
qctool docs: fix table formatting check-in: cbcc37d9f8 user: gav tags: master, trunk
14:23
qctool: further doc tweaks check-in: 3323c8f5b7 user: gav tags: master, trunk
14:22
Tweaks to change history check-in: 6d59c27cfa user: gav tags: master, trunk
14:18
qctool: update docs to add change history page plus other tweaks check-in: a21e9d7500 user: gav tags: master, trunk
13:15
Update hptest docs to add logo check-in: f73f23b540 user: gav tags: master, trunk
2021-04-06
20:15
qctool docs: use new doc build system check-in: 1fe8e4b85d user: gav tags: master, trunk
2021-04-04
22:49
waf release step: update for qctool, inthinnerator, hptest and ldbird check-in: 19cc93f2b2 user: gav tags: master, trunk
21:49
Merged from v2.0.8. Bump to v2.2.0-rc1 check-in: 45978a8ebc user: gav tags: master, trunk
2021-04-01
22:00
Remove inflation.cpp check-in: bc4a8ca712 user: gav tags: master, trunk
21:53
LDBIRD docs: move the bird check-in: aecdc2036c user: gav tags: master, trunk
21:38
Updated ldbird docs check-in: 45f233d47c user: gav tags: master, trunk
21:02
README.md: update to point to HPTEST, LDBIRD documentation check-in: 3364e64c0a user: gav tags: master, trunk
12:55
LDBIRD doc: remove repeat check-in: db19fd9b10 user: gav tags: master, trunk, v2.1.9
12:10
Moved v2.1.9 tag to capture doc changes check-in: d35e052c66 user: gav tags: master, trunk
12:07
Added LDBIRD docs check-in: 80aef0ab18 user: gav tags: master, trunk
12:04
ldbird: fix use of analysis_id so it is the same across R, Frequency, and Histogram tables check-in: 6c818f8736 user: gav tags: master, trunk