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50 most recent check-ins
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2024-04-10
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| 08:36 | Bump to v2.1.2. Workaround bug with missing -o. Output missing alternate_ids as . not blank. Inspect the contents of the file to determine separator if not clear from extension. Leaf check-in: c8d164f27c user: gav tags: trunk | |
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2024-03-27
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| 23:47 | Bump to v2.1.1 check-in: 11c73dc113 user: iws573 tags: trunk | |
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2020-09-22
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| 08:21 | doc: fix rename -priors -> -prior-file Leaf check-in: 41bacf1b0f user: gav tags: v2.0.6, release | |
| 08:18 | Doc updates for version and new download page check-in: 72e837504a user: gav tags: release | |
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2020-09-21
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| 16:42 | Bump to v2.0.6. Do not crash when an infinite standard error is input. Also, read '-1's in SNPTEST input as NAs. check-in: a43a4a6a35 user: gav tags: release | |
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2020-08-29
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| 22:10 | Add waf release option again. Include example files. check-in: 9aec6a16fb user: gav tags: v2.0.5, release | |
| 21:57 | Bump trunk to v2.1 (development) series check-in: bbd6705f72 user: gav tags: trunk | |
| 21:56 | Merged from trunk check-in: 6865d4fd92 user: gav tags: release | |
| 21:14 | Bump to v2.0.5. Make VERSION updated without configure check-in: 75fa090f6a user: gav tags: trunk | |
| 17:39 | Create new branch named "release" check-in: 14c2fe8d47 user: gav tags: v2.0.4, release | |
| 17:35 | Bump top v2.0.4. Rename -priors -> -prior-file check-in: 909cf3da68 user: gav tags: trunk | |
| 17:17 | Bumped to v2.0.3 check-in: d14fad62ea user: gav tags: trunk | |
| 17:16 | Remove metro/, add missing files. check-in: 36799146d5 user: gav tags: trunk | |
| 17:13 | Added missing file check-in: 567fe745b7 user: gav tags: trunk | |
| 17:09 | Bump to v2.0.2 check-in: 0efd3edbe7 user: gav tags: trunk | |
| 13:53 | Update for C++11. Update genfile qcdb appcontext statfile from opensnptest revision b0c206793b check-in: 846d85f862 user: gav tags: trunk | |
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2020-07-29
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| 13:56 | Bump to v2.0.1 to avoid confusion with version numbers vs. previous v2.0 version. check-in: 1b1d643509 user: gav tags: trunk | |
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2020-07-28
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| 20:52 | Bump to v1.0.1 check-in: c3bdccb388 user: gav tags: trunk | |
| 20:35 | Remove unneeded boost files check-in: 1641c17179 user: gav tags: trunk | |
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2020-04-11
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| 22:28 | Fix README formatting again check-in: ce6a469dbf user: gav tags: trunk | |
| 22:28 | Fix README formatting check-in: 3119ecc133 user: gav tags: trunk | |
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2019-05-17
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| 22:38 | Start beta branch. Bump to v1.0 check-in: 7bf794e906 user: gavin.band@well.ox.ac.uk tags: trunk | |
| 22:30 | If file extension is not specific, test space, tab and comma seperated Leaf check-in: a7747d6e03 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
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2018-05-17
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| 10:25 | bingwa: add -no-identifiers flag check-in: 0e98cc839b user: gavin.band@well.ox.ac.uk tags: trunk, master | |
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2018-05-14
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| 16:38 | Remove specialised treatment of info. Output per-cohort variables floats if possible check-in: 5f6d1d957d user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 16:19 | Work to ensure trust variables / extra variables do not mess with other reported values. Report info in per cohort results check-in: c6334a0de6 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 14:36 | wscript: respect cxx and linkflags. Update to 1.0-dev check-in: df23c0dccf user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 14:24 | bingwa: rationalise use of tables and counts. check-in: 6a42f367cd user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 13:41 | bingwa: make -per-cohort-prior optional. Add -rename-parameters. Output meta-analysis counts. check-in: be97abf3c1 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 13:40 | Tweak snptest test data column names check-in: 770f0a5196 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
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2018-05-11
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| 15:36 | bingwa: add -analysis-id option check-in: 3edc51b526 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
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2017-12-15
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| 12:41 | Doc updates check-in: f04cda5f16 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 11:16 | Doc update, remove unwanted qctool/inthinnerator/bgen docs, cite MalariaGEN 2015 paper. check-in: ed53065c4c user: gavin.band@well.ox.ac.uk tags: trunk, master | |
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2017-08-02
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| 14:59 | Go back to using a counts table, but output the detail variables first for appropriate ordering check-in: 5454bab098 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 14:46 | bingwa: revert to simpler design with two tables, due to problems with column orering in 3 tables check-in: 5fa06ed2d9 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 14:02 | Put trust variables into both counts and detail tables check-in: 2f48c505c5 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 13:57 | Re-jig the counts / detail tables again: put the trust variables in detail table check-in: 296bff6b0f user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 13:22 | bingwa: rejig to place N and B allele frequency in detail table check-in: cb9127a6a8 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 13:18 | Move :trusted variables to Detail table check-in: f245d9f00a user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 12:48 | Merged check-in: 8a01e2ebee user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 12:45 | bingwa: add per-cohort sample total (N) to counts table check-in: ff6466f377 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 12:34 | bingwa: work on -trust-variants-where. Remove now-unwanted filtering options check-in: 216b734a97 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
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2017-08-01
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| 16:36 | bingwa: put counts in <prefix>Counts table. Include all results in output even when unused in meta-analysis check-in: 57967ce231 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
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2016-07-27
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| 12:46 | bignwa: fix bug in -prior-weights <filename> check-in: b16c2bd907 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 11:01 | bingwa: add -null_sd; allow -prior-weights to read from file. check-in: 52aaa30346 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 10:53 | Fix commented R code for multivariate case. Make -prior-weights read from a file or strings. check-in: f906480520 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
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2016-06-13
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| 15:54 | bingwa: round up ses to 7 significant digits. This guards against spurious non-positivity of covariance matrix. check-in: ac4c1201de user: gavin.band@well.ox.ac.uk tags: trunk, master | |
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2016-06-09
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| 14:44 | Fix included_betas check-in: 924b9b1196 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
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2016-06-03
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| 13:41 | Change versino to 0.9 check-in: 4eb87c46f4 user: gavin.band@well.ox.ac.uk tags: trunk, master | |
| 13:40 | Added missing files check-in: b0b74e4ea1 user: gavin.band@well.ox.ac.uk tags: trunk, master | |