code.enkre.net

BGEN

A reference implementation of the BGEN format, written in C++.

QCTOOL

The QCTOOL program for manipulation and quality control of genome-wide datasets.

HPTEST

Software to test for genetic association between hosts and pathogens. HPTEST is built with QCTOOL.

LDBIRD

Software to compute and histogram pairwise LD metrics. LDBIRD is built with QCTOOL.

BINGWA

Software for bayesian and frequentist meta-analysis of genetic association test summary statistics.

OpenSNPTEST

Under development - watch this space...