A reference implementation of the BGEN format, written in C++.
The QCTOOL program for manipulation and quality control of genome-wide datasets.
Software to test for genetic association between hosts and pathogens. HPTEST is built with QCTOOL.
Software to compute and histogram pairwise LD metrics. LDBIRD is built with QCTOOL.
Software for bayesian and frequentist meta-analysis of genetic association test summary statistics.
Under development - watch this space...