bgcolor	#	mtime	type	status	subsystem	title
#f5ebe1	00feb374f7	2020-06-27 16:57:11	Documentation	Open		Improve documentation on -snp-stats output
#f5ebe1	08a8716322	2020-06-27 16:24:11	Code_Defect	Open		Qctool fails on vcf file with mix of phased and unphased calls
#cfe8bd	0ca1159b29	2021-12-08 14:38:21	Build_Problem	Fixed		Avoid fossil as a dependency of qctool build
#f5ebe1	22d94b2f01	2020-06-27 16:52:43	Documentation	Open		Report algorithm for INFO score calculation in documentation
#cfe8bd	347169decb	2021-04-15 14:41:20	Documentation	Fixed		Docs: do not link to missing SHAPEIT doc format page
#f5ebe1	40450bb5f8	2020-06-27 17:05:42	Code_Defect	Open		assert(0) message when no sample file is provided
#cfe8bd	4d88dff8cc	2020-06-30 17:04:40	Code_Defect	Fixed		MalformedInputError with GP Data
#f5ebe1	51b74b434a	2020-06-27 17:08:50	Feature_Request	Open		Spliting multi-allelics into biallelic variants for GEMMA and others applications
#f5ebe1	64b2676691	2022-07-28 10:10:02	Code_Defect	Open		QCTOOL does not output dosages for bimbam
#f5ebe1	6f12e37d07	2020-06-27 17:07:32	Code_Defect	Open		qctool long format number_of_alleles does not match docs.
#cfe8bd	9c01ec9ee1	2020-06-27 16:47:52	Code_Defect	Fixed		QCTOOL compile fails on older compilers
#cfe8bd	a31af45e24	2021-11-05 00:05:47	Build_Problem	Fixed		QCTOOL build fails on gcc 4.4.7
#f5ebe1	b0a29cc9c1	2022-05-06 14:56:48	Incident	Open		Illegal instruction (core dumped)
#cfe8bd	b952a6be87	2020-07-09 11:58:10	Code_Defect	Fixed		Put sample identifiers into BGEN output files
#f5ebe1	be64f1db2b	2020-06-27 17:04:29	Documentation	Open		-flip-to-match-cohort1 / -match-alleles-to-cohort1 doc issue
#f5ebe1	c08e92e201	2020-06-27 16:22:47	Feature_Request	Open		Don't depend on system zlib
#cfe8bd	c4328f50dc	2022-05-06 14:26:24	Build_Problem	Fixed		Build fails
#f5ebe1	c5cc1032e8	2021-03-29 12:54:50	Code_Defect	Open		Apparently random failures when using tab-separated input files
#f5ebe1	d75b254c2b	2020-08-27 09:02:45	Feature_Request	Open		Compression level versus file size
#cfe8bd	e2c2e48101	2021-04-15 15:01:00	Documentation	Fixed		Docs: do not link to invalid FILE FORMAT page
#c8c8c8	ed21a597d5	2022-05-06 14:50:56	Documentation	Closed		Memory usage expectations for VCF to BGEN conversion?
#f5ebe1	f772e0095a	2020-06-27 17:11:55	Code_Defect	Open		Support computing SNP stats from phased genotype probabilities
#f5ebe1	8e76a0d792	2023-10-03 17:58:45	Code_Defect	Open		Problems generating Bgen file from
#f5ebe1	a3db1be34b	2024-04-12 14:02:26	Build_Problem	Open		Build error
#f5ebe1	5972634ffe	2024-04-19 09:12:37	Build_Problem	Open		Not able to compile qc tool
#f5ebe1	c8806e2921	2024-05-14 07:43:33	Build_Problem	Open		Tagged version releases above 2.2.0
#cfe8bd	12291883f2	2024-08-18 11:10:51	Documentation	Fixed		.tgz is the incorrect suffix for a zip file
#f5ebe1	9139e95b12	2025-08-25 13:25:57	Code_Defect	Open		Build fails with g++ >= 13.3