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11:58 Fixed ticket [b952a6be87]: Put sample identifiers into BGEN output files plus 3 other changes artifact: 3624f8e837 user: gav
17:03 Ticket [b952a6be87]: 6 changes artifact: b873dce968 user: gav
Bump to v2.0.8. Implement fixes for [b952a6be] and [4d88dff8cc]. check-in: 2fcd3b2679 user: gav tags: release
Make qctool understand when genotype source contains sample identifiers, to fix issue [b952a6be]. This change should really have been made against trunk but placing here because I have implemented it here. This change requires additional testing; tests fail at present which may be due to incompatible sample IDs in test data sources. check-in: 500cd8c3bd user: gav tags: b952a6be-fix
09:25 Ticket [4d88dff8cc] MalformedInputError with GP Data status still Open with 3 other changes artifact: 833ff47de2 user: gav
16:31 New ticket [b952a6be87] Put sample identifiers into BGEN output files. artifact: 5d371bf521 user: gav

Ticket UUID: b952a6be877d441340c631a815f2722038fe128d
Title: Put sample identifiers into BGEN output files
Status: Fixed Type: Code_Defect
Severity: Important Priority: Immediate
Subsystem: Resolution: Fixed
Last Modified: 2020-07-09 11:58:10
Version Found In: v2.0.7
User Comments:
gav added on 2020-06-27 16:31:45:

Currently BGEN output files only get sample identifiers if a sample file is specified with -s. This is true even if the input genotypes file has sample identifiers. This is annoying as it loses information about identifiers unless care is taken. Fix this!

gav added on 2020-06-30 17:03:27:

Fixed in v2.0.8

gav added on 2020-07-09 11:58:10:

Fixed in v2.0.8 [2fcd3b2679]